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2011
Collins SL, Carpenter SR, Swinton SM, Orenstein DE, Childers DL, Gragson TL, Grimm NB, Grove JM, Harlan SL, Kaye JP et al..  2011.  An integrated conceptual framework for long-term social-ecological research. Frontiers in Ecology and Environment. 9:351–357.
Sharma S, Vander Zanden JM, Magnuson JJ, Lyons J.  2011.  Comparing climate change and species invasions as drivers of coldwater fish population extripations. PLoS ONE. 6:e22906.
Weyhenmeyer GA, Livingstone DM, M. Meili JO, Benson BJ, Magnuson JJ.  2011.  Large geographical differences in the sensitivity of ice covered lakes and rivers in the Northern Hemisphere to temperature changes. Global Change Biology. 17:268-275.
2010
Gosz JR, Waide RB, Magnuson JJ.  2010.  Chapter 5: Twenty-eight years of the US-LTER program: experience, results, and research questions. Long-Term Ecological Research: Between Theory and Application. :59-74.
2009
Ghanbari RN, Bravo HR, Magnuson JJ, Hyzer WG, Benson BJ.  2009.  Coherence between lake ice cover, local climate and teleconnections (Lake Mendota, Wisconsin).. Journal of Hydrology. 374:282-293.
2008
Magnuson JJ.  2008.  Challenge of unveiling the invisible present. The vanishing present: Wisconsin's changing lands, waters and wildlife. :31-40.
2007
Houlahan JE, Currie DJ, Cottenie K, Cumming GS, Ernest SKM, Findlay CS, Fuhlendorf SD, Gaedke U, Legendre P, Magnuson JJ et al..  2007.  Compensatory dynamics are rare in natural ecological communities. Proceedings of the National Academy of Sciences. 104:3273-7.
Hein CL, Vander Zanden JM, Magnuson JJ.  2007.  Intensive trapping and increased fish predation cause massive population decline of an invasive crayfish. Freshwater Biology. 52:1134-1146.
Magnuson JJ.  2007.  Perspectives on the long-term dynamics of lakes in the landscape. Lake and Reservoir Management. 23:452-456.
Jensen OP, Benson BJ, Magnuson JJ, Card VM, Futter MN, Soranno PA, Stewart. KM.  2007.  Spatial analysis of ice phenology trends across the Laurentian Great Lakes region during a recent warming period. Limnology and Oceanography. 52:2013-2026.
2006
Lischka SA, Magnuson JJ.  2006.  Timing and site selection of spawning in a landlocked population of rainbow smelt in Wisconsin. Environmental Biology of Fishes. 76:413-418.
Benson BJ, Hanson PC, Chipman J, Bowser C.  2006.  Breaking the data barrier: Research facilitation through information management. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :259-279.
Magnuson JJ, Kratz TK, Benson BJ.  2006.  The challenge of time and space in ecology. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :3-16.
Magnuson JJ, Benson BJ, Lenters JD, Robertson DM.  2006.  Climate driven variability and change. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :123-150.
Magnuson JJ, Kratz TK, Benson BJ, Webster KE.  2006.  Coherent dynamics among lakes. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :89-106.
Wilson KA, Hrabik TR.  2006.  Ecological change and exotic invaders. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :151-167.
Frost TM, Fischer JM, Brezonik PL, Gonzalez MJ, Kratz TK, Watras CJ, Webster KE.  2006.  The experimental acidification of Little Rock Lake. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :168-186.
Riera JL, Kratz TK, Magnuson JJ.  2006.  Generalization from intersite research. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :107-120.
Armstrong D, Lauster GH, Sanderson BL, Lewis DB, Frost TM.  2006.  Jumping in: Within-lake processes and dynamics. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :187-213.
Arnott SE, Magnuson JJ, Dodson SI, Colby ACC.  2006.  Lakes as islands: Biodiversity, invasion and extinction. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :67-88.
Magnuson JJ, Kratz TK, Benson BJ.  2006.  Long-term dynamics of lakes in the landscape : long-term ecological research on North Temperate Lakes. Long-Term Ecological Research Network series. :xix,400.
Kratz TK, Webster KE, Riera JL, Lewis DB, Pollard AI.  2006.  Making Sense of the landscape: Geomorphic legacies and the landscape position of lakes. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :49-66.
Carpenter S, Lathrop RC, Nowak PJ, Armstrong D, Bennett E, Brasier K, Kahn B, Reed-Anderson T.  2006.  The ongoing experiment : the restoration of Lake Mendota. Long Term Dynamics of Lakes in the Landscape. :236-257.
Magnuson JJ, Benson BJ, Kratz TK, Armstrong DE, Bowser CJ, Colby ACC, Meinke TW, Montz PK, Webster KE.  2006.  Origin, operation, evolution and challenges. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :280-322.
Jorgensen BS, Nowacek D, Stedman R, Brasier K, D.Long.  2006.  People in a forested lake district. Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. :214-235.